Identification, classification, and expression profiles of heat shock transcription factors in tea plant (Camellia sinensis) under temperature stress.
Identifieur interne : 001820 ( Main/Exploration ); précédent : 001819; suivant : 001821Identification, classification, and expression profiles of heat shock transcription factors in tea plant (Camellia sinensis) under temperature stress.
Auteurs : Zhi-Wei Liu [République populaire de Chine] ; Zhi-Jun Wu [République populaire de Chine] ; Xing-Hui Li [République populaire de Chine] ; Ying Huang [République populaire de Chine] ; Hui Li [République populaire de Chine] ; Yong-Xin Wang [République populaire de Chine] ; Jing Zhuang [République populaire de Chine]Source :
- Gene [ 1879-0038 ] ; 2016.
Descripteurs français
- KwdFr :
- Camellia sinensis (génétique), Camellia sinensis (métabolisme), Facteurs de transcription (biosynthèse), Facteurs de transcription (génétique), Facteurs de transcription de choc thermique (MeSH), Protéines de liaison à l'ADN (biosynthèse), Protéines de liaison à l'ADN (génétique), Protéines végétales (biosynthèse), Protéines végétales (génétique), Réaction de choc thermique (physiologie), Régulation de l'expression des gènes végétaux (physiologie).
- MESH :
- biosynthèse : Facteurs de transcription, Protéines de liaison à l'ADN, Protéines végétales.
- génétique : Camellia sinensis, Facteurs de transcription, Protéines de liaison à l'ADN, Protéines végétales.
- métabolisme : Camellia sinensis.
- physiologie : Réaction de choc thermique, Régulation de l'expression des gènes végétaux.
- Facteurs de transcription de choc thermique.
English descriptors
- KwdEn :
- Camellia sinensis (genetics), Camellia sinensis (metabolism), DNA-Binding Proteins (biosynthesis), DNA-Binding Proteins (genetics), Gene Expression Regulation, Plant (physiology), Heat Shock Transcription Factors (MeSH), Heat-Shock Response (physiology), Plant Proteins (biosynthesis), Plant Proteins (genetics), Transcription Factors (biosynthesis), Transcription Factors (genetics).
- MESH :
- chemical , biosynthesis : DNA-Binding Proteins, Plant Proteins, Transcription Factors.
- genetics : Camellia sinensis, DNA-Binding Proteins, Plant Proteins, Transcription Factors.
- metabolism : Camellia sinensis.
- physiology : Gene Expression Regulation, Plant, Heat-Shock Response.
- chemical : Heat Shock Transcription Factors.
Abstract
In vascular plants, heat shock transcription factors (Hsfs) regulate heat stress response by regulating the expression of heat shock proteins. This study systematically and comprehensively analyzed the Hsf family in tea plant [Camellia sinensis (L.) O. Kuntze]. A total of 16 CsHsfs were identified from the transcriptome database of tea plant and analyzed for their phylogenetic relationships, motifs, and physicochemical characteristics. On the basis of the phylogenetic comparison of tea plant with Arabidopsis thaliana, Populus trichocarpa, Theobroma cacao, and Oryza sativa, the CsHsfs were classified into three classes, namely, A (56.25%), B (37.50%), and C (6.25%). Heat mapping showed that the expression profiles of CsHsf genes under non-stress conditions varied among four tea plant cultivars, namely, 'Yunnanshilixiang', 'Chawansanhao', 'Ruchengmaoyecha', and 'Anjibaicha'. Six CsHsf genes (CsHsfA1a, CsHsfA1b, CsHsfA6, CsHsfB1, CsHsfB2b, and CsHsfC1) were selected from classes A, B, and C to analyze the expression profiles of CsHsf genes through quantitative real-time PCR in 'Yingshuang', 'Anjibaicha', and 'Yunnanshilixiang' under high (38 °C) or low (4 °C) temperature stress. Temperature stress positively or negatively regulated all of the selected CsHsf genes, and the expression levels evidently varied even among CsHsf genes belonging to the same class. This study provided a relatively detailed summary of Hsfs in tea plant and may serve as a reference for further studies on the mechanism of temperature stress regulation by CsHsfs.
DOI: 10.1016/j.gene.2015.09.076
PubMed: 26431998
Affiliations:
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Electronic address: zhuangjing@njau.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095</wicri:regionArea><wicri:noRegion>Nanjing 210095</wicri:noRegion></affiliation></author></analytic><series><title level="j">Gene</title><idno type="eISSN">1879-0038</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Camellia sinensis (genetics)</term><term>Camellia sinensis (metabolism)</term><term>DNA-Binding Proteins (biosynthesis)</term><term>DNA-Binding Proteins (genetics)</term><term>Gene Expression Regulation, Plant (physiology)</term><term>Heat Shock Transcription Factors (MeSH)</term><term>Heat-Shock Response (physiology)</term><term>Plant Proteins (biosynthesis)</term><term>Plant Proteins (genetics)</term><term>Transcription Factors (biosynthesis)</term><term>Transcription Factors (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Camellia sinensis (génétique)</term><term>Camellia sinensis (métabolisme)</term><term>Facteurs de transcription (biosynthèse)</term><term>Facteurs de transcription (génétique)</term><term>Facteurs de transcription de choc thermique (MeSH)</term><term>Protéines de liaison à l'ADN (biosynthèse)</term><term>Protéines de liaison à l'ADN (génétique)</term><term>Protéines végétales (biosynthèse)</term><term>Protéines végétales (génétique)</term><term>Réaction de choc thermique (physiologie)</term><term>Régulation de l'expression des gènes végétaux (physiologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>DNA-Binding Proteins</term><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr"><term>Facteurs de transcription</term><term>Protéines de liaison à l'ADN</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Camellia sinensis</term><term>DNA-Binding Proteins</term><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Camellia sinensis</term><term>Facteurs de transcription</term><term>Protéines de liaison à l'ADN</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Camellia sinensis</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Camellia sinensis</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Réaction de choc thermique</term><term>Régulation de l'expression des gènes végétaux</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Heat-Shock Response</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Heat Shock Transcription Factors</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Facteurs de transcription de choc thermique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In vascular plants, heat shock transcription factors (Hsfs) regulate heat stress response by regulating the expression of heat shock proteins. This study systematically and comprehensively analyzed the Hsf family in tea plant [Camellia sinensis (L.) O. Kuntze]. A total of 16 CsHsfs were identified from the transcriptome database of tea plant and analyzed for their phylogenetic relationships, motifs, and physicochemical characteristics. On the basis of the phylogenetic comparison of tea plant with Arabidopsis thaliana, Populus trichocarpa, Theobroma cacao, and Oryza sativa, the CsHsfs were classified into three classes, namely, A (56.25%), B (37.50%), and C (6.25%). Heat mapping showed that the expression profiles of CsHsf genes under non-stress conditions varied among four tea plant cultivars, namely, 'Yunnanshilixiang', 'Chawansanhao', 'Ruchengmaoyecha', and 'Anjibaicha'. Six CsHsf genes (CsHsfA1a, CsHsfA1b, CsHsfA6, CsHsfB1, CsHsfB2b, and CsHsfC1) were selected from classes A, B, and C to analyze the expression profiles of CsHsf genes through quantitative real-time PCR in 'Yingshuang', 'Anjibaicha', and 'Yunnanshilixiang' under high (38 °C) or low (4 °C) temperature stress. Temperature stress positively or negatively regulated all of the selected CsHsf genes, and the expression levels evidently varied even among CsHsf genes belonging to the same class. This study provided a relatively detailed summary of Hsfs in tea plant and may serve as a reference for further studies on the mechanism of temperature stress regulation by CsHsfs.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26431998</PMID><DateCompleted><Year>2016</Year><Month>03</Month><Day>18</Day></DateCompleted><DateRevised><Year>2017</Year><Month>11</Month><Day>16</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1879-0038</ISSN><JournalIssue CitedMedium="Internet"><Volume>576</Volume><Issue>1 Pt 1</Issue><PubDate><Year>2016</Year><Month>Jan</Month><Day>15</Day></PubDate></JournalIssue><Title>Gene</Title><ISOAbbreviation>Gene</ISOAbbreviation></Journal><ArticleTitle>Identification, classification, and expression profiles of heat shock transcription factors in tea plant (Camellia sinensis) under temperature stress.</ArticleTitle><Pagination><MedlinePgn>52-9</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.gene.2015.09.076</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S0378-1119(15)01185-3</ELocationID><Abstract><AbstractText>In vascular plants, heat shock transcription factors (Hsfs) regulate heat stress response by regulating the expression of heat shock proteins. This study systematically and comprehensively analyzed the Hsf family in tea plant [Camellia sinensis (L.) O. Kuntze]. A total of 16 CsHsfs were identified from the transcriptome database of tea plant and analyzed for their phylogenetic relationships, motifs, and physicochemical characteristics. On the basis of the phylogenetic comparison of tea plant with Arabidopsis thaliana, Populus trichocarpa, Theobroma cacao, and Oryza sativa, the CsHsfs were classified into three classes, namely, A (56.25%), B (37.50%), and C (6.25%). Heat mapping showed that the expression profiles of CsHsf genes under non-stress conditions varied among four tea plant cultivars, namely, 'Yunnanshilixiang', 'Chawansanhao', 'Ruchengmaoyecha', and 'Anjibaicha'. Six CsHsf genes (CsHsfA1a, CsHsfA1b, CsHsfA6, CsHsfB1, CsHsfB2b, and CsHsfC1) were selected from classes A, B, and C to analyze the expression profiles of CsHsf genes through quantitative real-time PCR in 'Yingshuang', 'Anjibaicha', and 'Yunnanshilixiang' under high (38 °C) or low (4 °C) temperature stress. Temperature stress positively or negatively regulated all of the selected CsHsf genes, and the expression levels evidently varied even among CsHsf genes belonging to the same class. This study provided a relatively detailed summary of Hsfs in tea plant and may serve as a reference for further studies on the mechanism of temperature stress regulation by CsHsfs.</AbstractText><CopyrightInformation>Copyright © 2015 Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Zhi-Wei</ForeName><Initials>ZW</Initials><AffiliationInfo><Affiliation>Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Zhi-Jun</ForeName><Initials>ZJ</Initials><AffiliationInfo><Affiliation>Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Xing-Hui</ForeName><Initials>XH</Initials><AffiliationInfo><Affiliation>Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Ying</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Hui</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Yong-Xin</ForeName><Initials>YX</Initials><AffiliationInfo><Affiliation>Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhuang</LastName><ForeName>Jing</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China. Electronic address: zhuangjing@njau.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>10</Month><Day>14</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Gene</MedlineTA><NlmUniqueID>7706761</NlmUniqueID><ISSNLinking>0378-1119</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004268">DNA-Binding Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000076249">Heat Shock Transcription Factors</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D028241" MajorTopicYN="Y">Camellia sinensis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004268" MajorTopicYN="Y">DNA-Binding Proteins</DescriptorName><QualifierName UI="Q000096" MajorTopicYN="N">biosynthesis</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000076249" MajorTopicYN="N">Heat Shock Transcription Factors</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018869" MajorTopicYN="N">Heat-Shock Response</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="Y">Plant Proteins</DescriptorName><QualifierName UI="Q000096" MajorTopicYN="N">biosynthesis</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="Y">Transcription Factors</DescriptorName><QualifierName UI="Q000096" MajorTopicYN="N">biosynthesis</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Hsf</Keyword><Keyword MajorTopicYN="N">Quantitative real-time PCR</Keyword><Keyword MajorTopicYN="N">Tea plant</Keyword><Keyword MajorTopicYN="N">Temperature stresses</Keyword><Keyword MajorTopicYN="N">Transcription factors</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>02</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2015</Year><Month>09</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>09</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>10</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>10</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>3</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26431998</ArticleId><ArticleId IdType="pii">S0378-1119(15)01185-3</ArticleId><ArticleId IdType="doi">10.1016/j.gene.2015.09.076</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Liu, Zhi Wei" sort="Liu, Zhi Wei" uniqKey="Liu Z" first="Zhi-Wei" last="Liu">Zhi-Wei Liu</name></noRegion><name sortKey="Huang, Ying" sort="Huang, Ying" uniqKey="Huang Y" first="Ying" last="Huang">Ying Huang</name><name sortKey="Li, Hui" sort="Li, Hui" uniqKey="Li H" first="Hui" last="Li">Hui Li</name><name sortKey="Li, Xing Hui" sort="Li, Xing Hui" uniqKey="Li X" first="Xing-Hui" last="Li">Xing-Hui Li</name><name sortKey="Wang, Yong Xin" sort="Wang, Yong Xin" uniqKey="Wang Y" first="Yong-Xin" last="Wang">Yong-Xin Wang</name><name sortKey="Wu, Zhi Jun" sort="Wu, Zhi Jun" uniqKey="Wu Z" first="Zhi-Jun" last="Wu">Zhi-Jun Wu</name><name sortKey="Zhuang, Jing" sort="Zhuang, Jing" uniqKey="Zhuang J" first="Jing" last="Zhuang">Jing Zhuang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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